3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
UUCAGUACG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HCM_064 not in the Motif Atlas
Homologous match to HL_5TBW_058
Geometric discrepancy: 0.2639
The information below is about HL_5TBW_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34636.1
Basepair signature
cWW-cWW-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

6HCM|1|52|U|4301
6HCM|1|52|U|4302
6HCM|1|52|C|4303
6HCM|1|52|A|4304
6HCM|1|52|G|4305
6HCM|1|52|U|4306
6HCM|1|52|A|4307
6HCM|1|52|C|4308
6HCM|1|52|G|4309

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain Q3
eL18
Chain T3
eL21
Chain a3
uL15
Chain o3
eL42

Coloring options:


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