HL_6HCM_064

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_064 not in the Motif Atlas

Homologous match to HL_5TBW_058

Geometric discrepancy: 0.2639

The information below is about HL_5TBW_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6HCM|1|52|U|4301
6HCM|1|52|U|4302
6HCM|1|52|C|4303
6HCM|1|52|A|4304
6HCM|1|52|G|4305
6HCM|1|52|U|4306
6HCM|1|52|A|4307
6HCM|1|52|C|4308
6HCM|1|52|G|4309

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain Q3

eL18

Chain T3

eL21

Chain a3

uL15

Chain o3

eL42