HL_6HCM_067

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_067 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2153

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HCM|1|52|C|4417
6HCM|1|52|G|4418
6HCM|1|52|U|4419
6HCM|1|52|U|4420
6HCM|1|52|C|4421
6HCM|1|52|A|4422
6HCM|1|52|U|4423
6HCM|1|52|A|4424
6HCM|1|52|G|4425

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain j1

eRF1(AAQ)

Chain m3

eL40