HL_6HCM_068

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6HCM|1|52|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_068 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2126

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6HCM|1|52|A|4474
6HCM|1|52|G|4475
6HCM|1|52|C|4476
6HCM|1|52|A|4477
6HCM|1|52|G|4478
6HCM|1|52|A|4479
6HCM|1|52|A|4480
6HCM|1|52|U|4481

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain m3

eL40