HL_6HCM_080
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GCAGCUAGCUGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCM_080 not in the Motif Atlas
- Geometric match to HL_8H9D_001
- Geometric discrepancy: 0.2988
- The information below is about HL_8H9D_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6HCM|1|82|G|46
6HCM|1|82|C|47
6HCM|1|82|A|48
6HCM|1|82|G|49
6HCM|1|82|C|50
6HCM|1|82|U|51
6HCM|1|82|A|52
6HCM|1|82|G|53
6HCM|1|82|C|54
6HCM|1|82|U|55
6HCM|1|82|G|56
6HCM|1|82|C|57
Current chains
- Chain 82
- 5.8S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain X3
- uL23
- Chain h3
- uL29
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
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