HL_6HCM_094

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_094 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3536

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCM|1|A1|U|538
6HCM|1|A1|C|539
6HCM|1|A1|U|540
6HCM|1|A1|U|541
6HCM|1|A1|U|542
6HCM|1|A1|C|543
6HCM|1|A1|G|544
6HCM|1|A1|A|545

Current chains

Chain A1

18S ribosomal RNA

Nearby chains