HL_6HCM_100

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_100 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3309

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6HCM|1|A1|G|993
6HCM|1|A1|C|994
6HCM|1|A1|G|995
6HCM|1|A1|A|996
6HCM|1|A1|A|997
6HCM|1|A1|A|998
6HCM|1|A1|G|999
6HCM|1|A1|C|1000

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

uS15

Chain b1

eS26