HL_6HCM_102

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UUAUUCCCAUGA

Length

12 nucleotides

Bulged bases

6HCM|1|A1|C|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_102 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3424

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6HCM|1|A1|U|1111
6HCM|1|A1|U|1112
6HCM|1|A1|A|1113
6HCM|1|A1|U|1114
6HCM|1|A1|U|1115
6HCM|1|A1|C|1116
6HCM|1|A1|C|1117
6HCM|1|A1|C|1118
6HCM|1|A1|A|1119
6HCM|1|A1|U|1120
6HCM|1|A1|G|1121
6HCM|1|A1|A|1122

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S3a

Chain S1

eS17

Chain c1

40S ribosomal protein S27