HL_6HCM_103

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_103 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.251

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCM|1|A1|G|1141
6HCM|1|A1|G|1142
6HCM|1|A1|A|1143
6HCM|1|A1|A|1144
6HCM|1|A1|A|1145
6HCM|1|A1|C|1146

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain D1

uS5

Chain X1

Ribosomal protein S15a

Chain b1

eS26