HL_6HCM_130

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGAGAGUUCUCUUUUCUUU

Length

19 nucleotides

Bulged bases

6HCM|1|52|C|2627, 6HCM|1|52|U|2631, 6HCM|1|52|U|2632

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_130 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3635

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6HCM|1|52|G|2619
6HCM|1|52|G|2620
6HCM|1|52|A|2621
6HCM|1|52|G|2622
6HCM|1|52|A|2623
6HCM|1|52|G|2624
6HCM|1|52|U|2625
6HCM|1|52|U|2626
6HCM|1|52|C|2627
6HCM|1|52|U|2628
6HCM|1|52|C|2629
6HCM|1|52|U|2630
6HCM|1|52|U|2631
6HCM|1|52|U|2632
6HCM|1|52|U|2633
6HCM|1|52|C|2634
6HCM|1|52|U|2635
6HCM|1|52|U|2636
6HCM|1|52|U|2637

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22

Chain g3

eL34