HL_6HCM_133

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CCGCGGCGG

Length

9 nucleotides

Bulged bases

6HCM|1|52|C|3673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_133 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3713

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6HCM|1|52|C|3667
6HCM|1|52|C|3668
6HCM|1|52|G|3669
6HCM|1|52|C|3670
6HCM|1|52|G|3671
6HCM|1|52|G|3672
6HCM|1|52|C|3673
6HCM|1|52|G|3674
6HCM|1|52|G|3675

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain G3

eL8

Chain N3

Ribosomal protein L15