HL_6HCM_165

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_165 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.242

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6HCM|1|52|U|2006
6HCM|1|52|G|2007
6HCM|1|52|U|2008
6HCM|1|52|A|2009
6HCM|1|52|A|2010
6HCM|1|52|C|2011
6HCM|1|52|A|2012
6HCM|1|52|A|2013

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain j1

eRF1(AAQ)

Chain m3

eL40

Chain s3

uL10

Chain t3

Ribosomal protein L12