HL_6HCM_170
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6HCM|1|52|A|3642, 6HCM|1|52|A|3643, 6HCM|1|52|U|3644, 6HCM|1|52|U|3645, 6HCM|1|52|A|3648
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCM_170 not in the Motif Atlas
- Homologous match to HL_8CRE_044
- Geometric discrepancy: 0.1737
- The information below is about HL_8CRE_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6HCM|1|52|U|3639
6HCM|1|52|U|3640
6HCM|1|52|U|3641
6HCM|1|52|A|3642
6HCM|1|52|A|3643
6HCM|1|52|U|3644
6HCM|1|52|U|3645
6HCM|1|52|A|3646
6HCM|1|52|A|3647
6HCM|1|52|A|3648
6HCM|1|52|A|3649
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain A3
- Ribosomal protein L8
- Chain j3
- Ribosomal protein L37
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