HL_6HCQ_010

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

6HCQ|1|51|G|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_010 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.3038

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6HCQ|1|51|G|230
6HCQ|1|51|U|231
6HCQ|1|51|G|232
6HCQ|1|51|U|233
6HCQ|1|51|G|234
6HCQ|1|51|A|235
6HCQ|1|51|G|236
6HCQ|1|51|G|237
6HCQ|1|51|C|238

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Y3

Ribosomal protein L26