HL_6HCQ_052

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AAGAAAUU

Length

8 nucleotides

Bulged bases

6HCQ|1|51|A|3726

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_052 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.2668

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6HCQ|1|51|A|3723
6HCQ|1|51|A|3724
6HCQ|1|51|G|3725
6HCQ|1|51|A|3726
6HCQ|1|51|A|3727
6HCQ|1|51|A|3728
6HCQ|1|51|U|3729
6HCQ|1|51|U|3730

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain i3

60S ribosomal protein L36

Chain o3

eL42

Chain w3

Ribosomal protein