HL_6HCQ_080

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCACUUGC

Length

8 nucleotides

Bulged bases

6HCQ|1|81|U|111

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_080 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3628

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCQ|1|81|G|106
6HCQ|1|81|C|107
6HCQ|1|81|A|108
6HCQ|1|81|C|109
6HCQ|1|81|U|110
6HCQ|1|81|U|111
6HCQ|1|81|G|112
6HCQ|1|81|C|113

Current chains

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain X3

uL23

Chain j3

Ribosomal protein L37

Chain l3

eL39