HL_6HCQ_081

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6HCQ|1|81|C|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_081 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.3795

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6HCQ|1|81|G|121
6HCQ|1|81|G|122
6HCQ|1|81|U|123
6HCQ|1|81|U|124
6HCQ|1|81|C|125
6HCQ|1|81|C|126
6HCQ|1|81|U|127
6HCQ|1|81|C|128
6HCQ|1|81|C|129

Current chains

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain X3

uL23