HL_6HCQ_084

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6HCQ|1|A2|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_084 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2735

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCQ|1|A2|G|156
6HCQ|1|A2|U|157
6HCQ|1|A2|A|158
6HCQ|1|A2|A|159
6HCQ|1|A2|U|160
6HCQ|1|A2|U|161
6HCQ|1|A2|C|162

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain Z2

eS24