HL_6HCQ_090

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_090 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.2546

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6HCQ|1|A2|U|416
6HCQ|1|A2|C|417
6HCQ|1|A2|A|418
6HCQ|1|A2|G|419
6HCQ|1|A2|G|420
6HCQ|1|A2|G|421

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain D2

eS1

Chain K2

Ribosomal protein S9 (Predicted)

Chain M2

Ribosomal protein S11

Chain X2

Ribosomal protein S15a

Chain Y2

uS12