HL_6HCQ_091
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6HCQ|1|A2|A|448, 6HCQ|1|A2|C|450, 6HCQ|1|A2|G|451
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCQ_091 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.2066
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HCQ|1|A2|C|441
6HCQ|1|A2|C|442
6HCQ|1|A2|U|443
6HCQ|1|A2|G|444
6HCQ|1|A2|A|445
6HCQ|1|A2|G|446
6HCQ|1|A2|A|447
6HCQ|1|A2|A|448
6HCQ|1|A2|A|449
6HCQ|1|A2|C|450
6HCQ|1|A2|G|451
6HCQ|1|A2|G|452
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain F2
- eS4
- Chain H2
- 40S ribosomal protein S6
- Chain J2
- eS8
- Chain Z2
- eS24
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