HL_6HCQ_093

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6HCQ|1|A2|A|500, 6HCQ|1|A2|C|502, 6HCQ|1|A2|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_093 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.4378

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCQ|1|A2|C|498
6HCQ|1|A2|G|499
6HCQ|1|A2|A|500
6HCQ|1|A2|C|501
6HCQ|1|A2|C|502
6HCQ|1|A2|C|503
6HCQ|1|A2|G|504

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain Z2

eS24