HL_6HCQ_098

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCUAUUUUGUUGGUUUUCGGA

Length

21 nucleotides

Bulged bases

6HCQ|1|A2|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_098 not in the Motif Atlas

Geometric match to HL_5D5L_002

Geometric discrepancy: 0.3905

The information below is about HL_5D5L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6HCQ|1|A2|U|883
6HCQ|1|A2|C|884
6HCQ|1|A2|U|885
6HCQ|1|A2|A|886
6HCQ|1|A2|U|887
6HCQ|1|A2|U|888
6HCQ|1|A2|U|889
6HCQ|1|A2|U|890
6HCQ|1|A2|G|891
6HCQ|1|A2|U|892
6HCQ|1|A2|U|893
6HCQ|1|A2|G|894
6HCQ|1|A2|G|895
6HCQ|1|A2|U|896
6HCQ|1|A2|U|897
6HCQ|1|A2|U|898
6HCQ|1|A2|U|899
6HCQ|1|A2|C|900
6HCQ|1|A2|G|901
6HCQ|1|A2|G|902
6HCQ|1|A2|A|903

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain M2

Ribosomal protein S11