HL_6HCQ_135

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAUCUAAUUAGUG

Length

13 nucleotides

Bulged bases

6HCQ|1|51|U|3802

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_135 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.391

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6HCQ|1|51|C|3794
6HCQ|1|51|A|3795
6HCQ|1|51|U|3796
6HCQ|1|51|C|3797
6HCQ|1|51|U|3798
6HCQ|1|51|A|3799
6HCQ|1|51|A|3800
6HCQ|1|51|U|3801
6HCQ|1|51|U|3802
6HCQ|1|51|A|3803
6HCQ|1|51|G|3804
6HCQ|1|51|U|3805
6HCQ|1|51|G|3806

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain V3

Ribosomal protein L23

Chain n3

eL41