HL_6HCQ_180

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

6HCQ|1|q3|U|33

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_180 not in the Motif Atlas

Homologous match to HL_5IBB_210

Geometric discrepancy: 0.2679

The information below is about HL_5IBB_210

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

6HCQ|1|q3|A|31
6HCQ|1|q3|U|32
6HCQ|1|q3|U|33
6HCQ|1|q3|G|34
6HCQ|1|q3|A|35
6HCQ|1|q3|A|36
6HCQ|1|q3|A|37
6HCQ|1|q3|A|38
6HCQ|1|q3|U|39

Current chains

Chain q3

A/P tRNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Y2

uS12

Chain v3

mRNA