HL_6HD7_023

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6HD7|1|1|C|959, 6HD7|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.3053

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6HD7|1|1|C|958
6HD7|1|1|C|959
6HD7|1|1|U|960
6HD7|1|1|C|961
6HD7|1|1|A|962
6HD7|1|1|G|963

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C

60S ribosomal protein L42-A

Chain c

60S ribosomal protein L28

Chain d

60S ribosomal protein L29