HL_6HD7_025

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6HD7|1|1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_025 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.1974

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6HD7|1|1|C|1076
6HD7|1|1|U|1077
6HD7|1|1|U|1078
6HD7|1|1|A|1079
6HD7|1|1|A|1080
6HD7|1|1|U|1081
6HD7|1|1|U|1082
6HD7|1|1|G|1083

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain H

60S ribosomal protein L5

Chain V

60S ribosomal protein L21-A

Chain d

60S ribosomal protein L29