HL_6HD7_027

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_027 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.2429

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HD7|1|1|G|1148
6HD7|1|1|G|1149
6HD7|1|1|A|1150
6HD7|1|1|U|1151
6HD7|1|1|G|1152
6HD7|1|1|A|1153
6HD7|1|1|A|1154
6HD7|1|1|C|1155

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L7-A

Chain g

60S ribosomal protein L32

Chain h

60S ribosomal protein L33-A