HL_6HD7_051

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6HD7|1|1|A|2295, 6HD7|1|1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_051 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.2013

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6HD7|1|1|U|2292
6HD7|1|1|C|2293
6HD7|1|1|U|2294
6HD7|1|1|A|2295
6HD7|1|1|A|2296
6HD7|1|1|U|2297
6HD7|1|1|U|2298
6HD7|1|1|A|2299
6HD7|1|1|G|2300

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain X

60S ribosomal protein L23-A