HL_6HD7_083
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGUCGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 6HD7|1|B|G|18, 6HD7|1|B|U|19, 6HD7|1|B|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HD7_083 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.187
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
6HD7|1|B|C|13
6HD7|1|B|A|14
6HD7|1|B|G|15
6HD7|1|B|U|16
6HD7|1|B|C|17
6HD7|1|B|G|17|||A
6HD7|1|B|G|18
6HD7|1|B|U|19
6HD7|1|B|U|20
6HD7|1|B|A|21
6HD7|1|B|G|22
Current chains
- Chain B
- P-site tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 60S ribosomal protein L42-A
- Chain M
- 60S ribosomal protein L11-A
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