HL_6HD7_084

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGUCACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_084 not in the Motif Atlas

Homologous match to HL_4V90_033

Geometric discrepancy: 0.3

The information below is about HL_4V90_033

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6HD7|1|B|C|31
6HD7|1|B|C|32
6HD7|1|B|U|33
6HD7|1|B|G|34
6HD7|1|B|U|35
6HD7|1|B|C|36
6HD7|1|B|A|37
6HD7|1|B|C|38
6HD7|1|B|G|39

Current chains

Chain B

P-site tRNA

Nearby chains