HL_6HHQ_004
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUCG
- Length
- 5 nucleotides
- Bulged bases
- 6HHQ|1|1|U|133, 6HHQ|1|1|C|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HHQ_004 not in the Motif Atlas
- Homologous match to HL_5TBW_004
- Geometric discrepancy: 0.0757
- The information below is about HL_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86929.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6HHQ|1|1|C|132
6HHQ|1|1|U|133
6HHQ|1|1|U|134
6HHQ|1|1|C|135
6HHQ|1|1|G|136
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AI
- 60S ribosomal protein L35-A
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- 60S ribosomal protein L26-A
- Chain v
- 60S ribosomal protein L15-A
Coloring options: