HL_6HHQ_095
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HHQ_095 not in the Motif Atlas
- Geometric match to HL_4V88_205
- Geometric discrepancy: 0.1919
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6HHQ|1|A|A|829
6HHQ|1|A|U|830
6HHQ|1|A|U|831
6HHQ|1|A|U|832
6HHQ|1|A|U|833
6HHQ|1|A|G|834
6HHQ|1|A|U|835
6HHQ|1|A|U|836
6HHQ|1|A|G|837
6HHQ|1|A|G|838
6HHQ|1|A|U|839
6HHQ|1|A|U|840
6HHQ|1|A|U|841
6HHQ|1|A|C|842
6HHQ|1|A|U|843
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein S11-A
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