HL_6HHQ_116

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6HHQ|1|AR|U|133, 6HHQ|1|AR|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_116 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.2039

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6HHQ|1|AR|C|132
6HHQ|1|AR|U|133
6HHQ|1|AR|U|134
6HHQ|1|AR|C|135
6HHQ|1|AR|G|136

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L15-A

Chain DJ

60S ribosomal protein L35-A