HL_6HHQ_132

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6HHQ|1|AR|U|879, 6HHQ|1|AR|A|883, 6HHQ|1|AR|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_132 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0633

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6HHQ|1|AR|A|876
6HHQ|1|AR|C|877
6HHQ|1|AR|G|878
6HHQ|1|AR|U|879
6HHQ|1|AR|G|880
6HHQ|1|AR|C|881
6HHQ|1|AR|A|882
6HHQ|1|AR|A|883
6HHQ|1|AR|A|884
6HHQ|1|AR|U|885

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CR

60S ribosomal protein L17-A

Chain DL

60S ribosomal protein L37-A