HL_6HHQ_158

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6HHQ|1|AR|A|2138, 6HHQ|1|AR|A|2139, 6HHQ|1|AR|U|2140, 6HHQ|1|AR|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_158 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.0747

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6HHQ|1|AR|U|2135
6HHQ|1|AR|C|2136
6HHQ|1|AR|U|2137
6HHQ|1|AR|A|2138
6HHQ|1|AR|A|2139
6HHQ|1|AR|U|2140
6HHQ|1|AR|U|2141
6HHQ|1|AR|A|2142
6HHQ|1|AR|A|2143
6HHQ|1|AR|A|2144
6HHQ|1|AR|A|2145

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DL

60S ribosomal protein L37-A