HL_6HHQ_215

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6HHQ|1|sR|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_215 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1245

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6HHQ|1|sR|A|1238
6HHQ|1|sR|U|1239
6HHQ|1|sR|U|1240
6HHQ|1|sR|G|1241
6HHQ|1|sR|A|1242
6HHQ|1|sR|G|1243
6HHQ|1|sR|A|1244
6HHQ|1|sR|G|1245
6HHQ|1|sR|C|1246
6HHQ|1|sR|U|1247

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31