HL_6HMA_006

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6HMA|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HMA_006 not in the Motif Atlas

Geometric match to HL_4V9F_006

Geometric discrepancy: 0.1236

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6HMA|1|A|G|197
6HMA|1|A|A|198
6HMA|1|A|A|199
6HMA|1|A|A|200
6HMA|1|A|C|201
6HMA|1|A|A|202
6HMA|1|A|U|203
6HMA|1|A|C|204

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28