3D structure

PDB id
6HMA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
AGCACGUGAAAUU
Length
13 nucleotides
Bulged bases
6HMA|1|A|G|432
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HMA_013 not in the Motif Atlas
Homologous match to HL_4WF9_013
Geometric discrepancy: 0.2231
The information below is about HL_4WF9_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69139.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6HMA|1|A|A|427
6HMA|1|A|G|428
6HMA|1|A|C|429
6HMA|1|A|A|430
6HMA|1|A|C|431
6HMA|1|A|G|432
6HMA|1|A|U|433
6HMA|1|A|G|434
6HMA|1|A|A|435
6HMA|1|A|A|436
6HMA|1|A|A|437
6HMA|1|A|U|438
6HMA|1|A|U|439

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain V
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0809 s