HL_6HMA_071
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UGCGAUUGGAUUG
- Length
- 13 nucleotides
- Bulged bases
- 6HMA|1|A|G|1496, 6HMA|1|A|A|1497, 6HMA|1|A|U|1498, 6HMA|1|A|U|1503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HMA_071 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.2829
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HMA|1|A|U|1493
6HMA|1|A|G|1494
6HMA|1|A|C|1495
6HMA|1|A|G|1496
6HMA|1|A|A|1497
6HMA|1|A|U|1498
6HMA|1|A|U|1499
6HMA|1|A|G|1500
6HMA|1|A|G|1501
6HMA|1|A|A|1502
6HMA|1|A|U|1503
6HMA|1|A|U|1504
6HMA|1|A|G|1505
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L17
Coloring options: