3D structure

PDB id
6HRM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S d2d8 stapled ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
AACUGAGACACGGU
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HRM_008 not in the Motif Atlas
Homologous match to HL_5J7L_008
Geometric discrepancy: 0.0941
The information below is about HL_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6HRM|1|1|A|320
6HRM|1|1|A|321
6HRM|1|1|C|322
6HRM|1|1|U|323
6HRM|1|1|G|324
6HRM|1|1|A|325
6HRM|1|1|G|326
6HRM|1|1|A|327
6HRM|1|1|C|328
6HRM|1|1|A|329
6HRM|1|1|C|330
6HRM|1|1|G|331
6HRM|1|1|G|332
6HRM|1|1|U|333

Current chains

Chain 1
stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain u
30S ribosomal protein S16
Chain y
30S ribosomal protein S20

Coloring options:


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