HL_6HRM_034

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6HRM|1|1|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_034 not in the Motif Atlas

Geometric match to HL_5J7L_136

Geometric discrepancy: 0.0896

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HRM|1|1|G|1629
6HRM|1|1|G|1630
6HRM|1|1|A|1631
6HRM|1|1|A|1632
6HRM|1|1|A|1633
6HRM|1|1|C|1634

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34