HL_6HRM_040

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6HRM|1|1|A|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_040 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.1125

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6HRM|1|1|C|1811
6HRM|1|1|U|1812
6HRM|1|1|G|1813
6HRM|1|1|G|1814
6HRM|1|1|A|1815
6HRM|1|1|A|1816
6HRM|1|1|A|1817
6HRM|1|1|G|1818

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24