HL_6HRM_044

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6HRM|1|1|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_044 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1034

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6HRM|1|1|G|1916
6HRM|1|1|G|1917
6HRM|1|1|A|1918
6HRM|1|1|C|1919
6HRM|1|1|C|1920
6HRM|1|1|A|1921
6HRM|1|1|U|1922
6HRM|1|1|C|1923

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15