HL_6HRM_053
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 6HRM|1|1|A|2257, 6HRM|1|1|A|2258
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HRM_053 not in the Motif Atlas
- Geometric match to HL_7A0S_022
- Geometric discrepancy: 0.2508
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6HRM|1|1|U|2250
6HRM|1|1|1MG|2251
6HRM|1|1|PSU|2252
6HRM|1|1|5MU|2253
6HRM|1|1|G|2254
6HRM|1|1|A|2255
6HRM|1|1|A|2256
6HRM|1|1|A|2257
6HRM|1|1|A|2258
6HRM|1|1|A|2259
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L34
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