HL_6HRM_069

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

6HRM|1|1|A|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_069 not in the Motif Atlas

Geometric match to HL_5H9F_001

Geometric discrepancy: 0.3969

The information below is about HL_5H9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6HRM|1|1|A|3038
6HRM|1|1|C|3039
6HRM|1|1|U|3040
6HRM|1|1|A|3041
6HRM|1|1|C|3042
6HRM|1|1|G|3043
6HRM|1|1|G|3044
6HRM|1|1|U|3045

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains