HL_6HRM_079

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

6HRM|1|1|A|3419, 6HRM|1|1|C|3420, 6HRM|1|1|A|3422

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_079 not in the Motif Atlas

Geometric match to HL_5J7L_181

Geometric discrepancy: 0.3955

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6HRM|1|1|G|3416
6HRM|1|1|PSU|3417
6HRM|1|1|A|3418
6HRM|1|1|A|3419
6HRM|1|1|C|3420
6HRM|1|1|3TD|3421
6HRM|1|1|A|3422
6HRM|1|1|PSU|3423
6HRM|1|1|A|3424
6HRM|1|1|A|3425
6HRM|1|1|C|3426

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains