HL_6HRM_087
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HRM_087 not in the Motif Atlas
- Geometric match to HL_5J7L_189
- Geometric discrepancy: 0.0742
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
6HRM|1|1|U|3830
6HRM|1|1|G|3831
6HRM|1|1|C|3832
6HRM|1|1|A|3833
6HRM|1|1|A|3834
6HRM|1|1|U|3835
6HRM|1|1|G|3836
6HRM|1|1|G|3837
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L5
- Chain W
- 50S ribosomal protein L27
Coloring options: