HL_6HRM_090

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6HRM|1|1|A|3912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_090 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.0829

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6HRM|1|1|U|3910
6HRM|1|1|G|3911
6HRM|1|1|A|3912
6HRM|1|1|A|3913
6HRM|1|1|U|3914
6HRM|1|1|G|3915
6HRM|1|1|G|3916
6HRM|1|1|A|3917
6HRM|1|1|A|3918
6HRM|1|1|G|3919

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15