HL_6HRM_116

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6HRM|1|1|A|2576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_116 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4562

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6HRM|1|1|C|2570
6HRM|1|1|U|2571
6HRM|1|1|U|2572
6HRM|1|1|A|2573
6HRM|1|1|G|2574
6HRM|1|1|A|2575
6HRM|1|1|A|2576
6HRM|1|1|G|2577
6HRM|1|1|C|2578
6HRM|1|1|A|2579
6HRM|1|1|G|2580

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain I

50S ribosomal protein L11