HL_6HTQ_002

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGUAAGCAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_002 not in the Motif Atlas

Homologous match to HL_4WF9_002

Geometric discrepancy: 0.2914

The information below is about HL_4WF9_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6HTQ|1|A|U|87
6HTQ|1|A|G|88
6HTQ|1|A|U|89
6HTQ|1|A|A|90
6HTQ|1|A|A|91
6HTQ|1|A|G|92
6HTQ|1|A|C|93
6HTQ|1|A|A|94
6HTQ|1|A|A|95

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain U

50S ribosomal protein L24

Chain X

50S ribosomal protein L29