HL_6HTQ_034

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

6HTQ|1|A|G|1431, 6HTQ|1|A|A|1432, 6HTQ|1|A|U|1435, 6HTQ|1|A|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_034 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2399

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6HTQ|1|A|G|1428
6HTQ|1|A|U|1429
6HTQ|1|A|U|1430
6HTQ|1|A|G|1431
6HTQ|1|A|A|1432
6HTQ|1|A|U|1433
6HTQ|1|A|A|1434
6HTQ|1|A|U|1435
6HTQ|1|A|U|1436
6HTQ|1|A|C|1437

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23